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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79038646_79039132_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79038646 - 79039132
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AATCACTTAATG
Flanking Amino Acid:
CHFIGMPECEVILAQCVVYF
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
60
0.18
1.6
62.04
39.4

Associated Gene:

Gene:
WRNIP1
Ensembl Gene ID:
ENSAPLG00000013539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014103
79037876 - 79060894
23019