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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79040206_79045072_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79040206 - 79045072
Intron Length:
4867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCATTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACCC
Flanking Amino Acid:
QRSHILYDRAGEEHYNCISA
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
63.7
0.31
1
58.8
35.9
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
56
0.17
1.9
69.77
42

Associated Gene:

Gene:
WRNIP1
Ensembl Gene ID:
ENSAPLG00000013539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014103
79037876 - 79060894
23019