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Intron Name: Anas_platyrhynchos_platyrhynchos_2_7905042_7905387_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7905042 - 7905387

Intron Length:

346

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

CATGTCTTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCTGTTTTAAAA

Flanking Amino Acid:

ESQVSNMYAQALRERKRCIT

Intron Amino Acid Position:

669

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

70.8

0.47

0.9

64.9

36.1

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

60.1

0.31

1.5

67.32

39.7

Associated Gene:

Gene:

PAXIP1

Ensembl Gene ID:

ENSAPLG00000007829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041814

7893518 - 7927689

34172

ENSAPLT00000008155

7893127 - 7927689

34563