About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79053013_79060303_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79053013 - 79060303
Intron Length:
7291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ACTGCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGATTGTTACAA
Flanking Amino Acid:
ILWGPPGCGKTTLAHIIANS
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
68
0.45
1
57.8
39
Major PPT
77.7
0.62
0.9
73.6
36.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
44.4
-0.4
2.3
57.66
41.6

Associated Gene:

Gene:
WRNIP1
Ensembl Gene ID:
ENSAPLG00000013539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014103
79037876 - 79060894
23019