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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79065424_79109402_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79065424 - 79109402
Intron Length:
43979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
TATGCACTAACA
Flanking Amino Acid:
ESDPGIEDEKDIKEKSHLSE
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
74.3
0.55
0.8
68
32.3
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
52.8
0.08
2
70.91
40.6

Associated Gene:

Gene:
MYLK4
Ensembl Gene ID:
ENSAPLG00000013701
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014267
79051775 - 79123394
71620