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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79100045_79109402_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79100045 - 79109402
Intron Length:
9358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
TATGCACTAACA
Flanking Amino Acid:
GALLKKKIEKDIKEKSHLSE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
74.3
0.55
0.8
68
32.3
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
52.8
0.08
2
70.91
40.6

Associated Gene:

Gene:
MYLK4
Ensembl Gene ID:
ENSAPLG00000013701
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032031
79099385 - 79123394
24010