About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79115402_79116099_F


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
79115402 - 79116099

Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTTGGTAGA

5'SS Class:
major

3'SS Sequence:
TTATTTTTTACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TACTCAT

U12 Branch Point Sequence:
TTATTTTTTACA

Flanking Amino Acid:
IIKARGAKEKDEVKNEISVM

Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.1
0.57
1.2
70.1
42

Major BPS
87.1
0.92
0.7
85.9
22.5

Major PPT
92
0.94
0.7
87.7
29.5

Minor 5ss
30.1
-2.3
2.7
34.4
41.1

Minor BPS
65.1
0.47
1.6
75.19
35.9

Associated Gene:

Gene:
MYLK4

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

79099385 - 79123394
24010

79051775 - 79123394
71620