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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79119828_79120482_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79119828 - 79120482
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CTTTTGGTAATG
Flanking Amino Acid:
IKIIDFGLARRYKPREKLRV
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
73.8
0.54
0.9
68.7
37.2
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
44.7
-0.5
2.6
57.74
45

Associated Gene:

Gene:
MYLK4
Ensembl Gene ID:
ENSAPLG00000013701
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014267
79051775 - 79123394
71620
ENSAPLT00000032031
79099385 - 79123394
24010