About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79121285_79121646_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79121285 - 79121646
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATAAT
5'SS Class:
major
3'SS Sequence:
GGTTTTCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AAAACATTTACT
Flanking Amino Acid:
FISKLLIKEKCWRISATAAL
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
74.7
34.6
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
77.1
0.61
0.8
74.6
36.4
Minor 5ss
43
-0.8
2.7
56
43.7
Minor BPS
48.9
-0
1.9
67.09
42.6

Associated Gene:

Gene:
MYLK4
Ensembl Gene ID:
ENSAPLG00000013701
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032031
79099385 - 79123394
24010
ENSAPLT00000014267
79051775 - 79123394
71620