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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79143278_79144281_R

Intron Information:

Intron Rank:
144378
Intron Class:
major
Intron Phase:
Intron Coordinates:
79143278 - 79144281
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TCTGTCCAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
80.8
0.69
0.9
72.5
42.4
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
44
-0.5
2
50.59
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024950
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041053
79142544 - 79144779
2236