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Intron Name: Anas_platyrhynchos_platyrhynchos_2_7915175_7919761_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

7915175 - 7919761

Intron Length:

4587

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

ACCTGCTTTTCAG|C

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

GCATCCTTGACA

Flanking Amino Acid:

TLSVRCGALLPVNGFSPESC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

-0.1

1.4

53.6

45.9

Major BPS

0.62

1.4

85.7

34.9

Major PPT

76.9

0.61

0.9

72.8

36.8

Minor 5ss

96.3

1.56

0.7

94.6

16.8

Minor BPS

73.5

0.73

1.2

72.12

39.7

Associated Gene:

Gene:

PAXIP1

Ensembl Gene ID:

ENSAPLG00000007829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041814

7893518 - 7927689

34172

ENSAPLT00000008155

7893127 - 7927689

34563