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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7919806_7921665_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7919806 - 7921665
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACA
Flanking Amino Acid:
REVFDLPVVKPSWVTLSVRC
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
PAXIP1
Ensembl Gene ID:
ENSAPLG00000007829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041814
7893518 - 7927689
34172
ENSAPLT00000008155
7893127 - 7927689
34563