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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79202766_79203425_F

Intron Information:

Intron Rank:
138666
Intron Class:
major
Intron Phase:
Intron Coordinates:
79202766 - 79203425
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
GTTCTTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTATATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.9
0.47
1
66.7
38.5
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
61.9
0.45
1.6
77.29
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024649
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032506
79202344 - 79204533
2190