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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79245097_79246789_R

Intron Information:

Intron Rank:
151912
Intron Class:
major
Intron Phase:
Intron Coordinates:
79245097 - 79246789
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTAAGTG
5'SS Class:
major
3'SS Sequence:
TGTCCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TGTCCCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1
53.7
37.3
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
75.3
0.57
0.8
68.8
31.7
Minor 5ss
34.2
-1.8
3.5
42.9
46.6
Minor BPS
54
0.12
2
70.34
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028465
79232694 - 79247144
14451
ENSAPLT00000024028
79241265 - 79247144
5880