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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79265584_79322857_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79265584 - 79322857
Intron Length:
57274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCCTATATCT
Flanking Amino Acid:
VALITGITGQDGSYLAEFLL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.1
40.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.4
0.84
0.7
80.6
31.4
Minor 5ss
31.4
-2.1
3.9
45.4
49.7
Minor BPS
58
0.33
1.9
82.49
38.6

Associated Gene:

Gene:
GMDS
Ensembl Gene ID:
ENSAPLG00000013864
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014446
79265182 - 79671011
405830