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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79322903_79326534_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79322903 - 79326534
Intron Length:
3632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTAACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CCTTGTTTAACC
Flanking Amino Acid:
AEFLLEKGYEVHGIVRRSSS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
69.9
0.45
0.9
59.6
41.6
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
62.5
0.37
1.8
69.26
43

Associated Gene:

Gene:
GMDS
Ensembl Gene ID:
ENSAPLG00000013864
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014446
79265182 - 79671011
405830