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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79326623_79331346_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79326623 - 79331346
Intron Length:
4724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTAAACTCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCTTAAACT
Flanking Amino Acid:
YKNPRAHTEGNMKLHYGDLT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
62.2
0.28
1.1
61.3
39.8
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
73.5
0.82
1.6
88.47
36.7

Associated Gene:

Gene:
GMDS
Ensembl Gene ID:
ENSAPLG00000013864
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014446
79265182 - 79671011
405830