Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79417088_79417955_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79417088 - 79417955

Intron Length:

868

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

ATTATTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATTAT

U12 Branch Point Sequence:

ACGTCTCCAATT

Flanking Amino Acid:

TTPFYPRSPYGAAKLYAYWI

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.8

0.9

74.3

34.1

Major BPS

64.6

0.36

1.1

55.7

39.9

Major PPT

82.3

0.73

0.8

77.8

35.8

Minor 5ss

33.2

-1.9

3.4

45.7

43.4

Minor BPS

47.5

-0.1

1.8

62.87

Associated Gene:

Gene:

GMDS

Ensembl Gene ID:

ENSAPLG00000013864

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014446

79265182 - 79671011

405830