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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79446303_79589508_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79446303 - 79589508
Intron Length:
143206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
ATGCACTGAATC
Flanking Amino Acid:
DWGHARDYVEAMWLMLQTDE
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
66.4
0.41
1
61.3
37
Major PPT
78.7
0.65
0.8
73.5
31.5
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
50.3
-0
1.6
60.57
38.2

Associated Gene:

Gene:
GMDS
Ensembl Gene ID:
ENSAPLG00000013864
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014446
79265182 - 79671011
405830