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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79589628_79598755_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79589628 - 79598755
Intron Length:
9128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCTTCTTTACAG
Flanking Amino Acid:
KSFKHIGKTIVWEGKNENEV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
85.9
0.81
0.7
80.2
31.2
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
57.4
0.09
1.8
63.96
44.2

Associated Gene:

Gene:
GMDS
Ensembl Gene ID:
ENSAPLG00000013864
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014446
79265182 - 79671011
405830