Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79730471_79740721_F

Intron Information:

Intron Rank:

149739

Intron Class:

major

Intron Phase:

Intron Coordinates:

79730471 - 79740721

Intron Length:

10251

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTTCA

5'SS Class:

major

3'SS Sequence:

ACTTCTCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

CCATCCTCTACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

67.1

34.3

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

78.3

0.64

0.8

70.2

35.8

Minor 5ss

37.9

-1.4

2.9

51.5

44.9

Minor BPS

53.1

0.18

1.9

69.09

47.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030564

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033770

79707466 - 79740730

33265