About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79766849_79770387_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
79766849 - 79770387
Intron Length:
3539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGTTTCTGAACA
Flanking Amino Acid:
PAPEPPRRPLSGIASLPASP
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.7
80.2
25.1
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
68
0.56
1.4
73.91
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018729
79766037 - 79771406
5370