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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79814811_79814897_F

Intron Information:

Intron Rank:
149268
Intron Class:
major
Intron Phase:
Intron Coordinates:
79814811 - 79814897
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TCCACCTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.1
49.8
41.3
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
26.4
-2.7
3.2
30.1
42.9
Minor BPS
48.4
-0.2
1.9
52.64
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030267
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041966
79814555 - 79815523
969
ENSAPLT00000041267
79814555 - 79846138
31584
ENSAPLT00000022681
79814555 - 79844484
29930
ENSAPLT00000020442
79814555 - 79815523
969