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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79912836_79912966_F

Intron Information:

Intron Rank:
148546
Intron Class:
major
Intron Phase:
Intron Coordinates:
79912836 - 79912966
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGTGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
66.6
32.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.2
0.72
0.9
82.8
32.6
Minor 5ss
35.3
-1.7
3.1
40.8
39.8
Minor BPS
56.7
0.29
1.6
72.13
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029969
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021716
79910080 - 79913041
2962