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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79913119_79937228_F

Intron Information:

Intron Rank:
127351
Intron Class:
major
Intron Phase:
Intron Coordinates:
79913119 - 79937228
Intron Length:
24110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTACC
5'SS Class:
major
3'SS Sequence:
GCTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAAAT
U12 Branch Point Sequence:
TCAGCCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.7
38.2
Major BPS
50.5
0.01
1.1
57.3
34.4
Major PPT
75.7
0.58
0.8
69
31.7
Minor 5ss
36.1
-1.6
2.9
43.4
37.9
Minor BPS
45
-0.3
2.1
62.84
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021988
79913058 - 79937647
24590