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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79923379_79928906_F

Intron Information:

Intron Rank:
127354
Intron Class:
major
Intron Phase:
Intron Coordinates:
79923379 - 79928906
Intron Length:
5528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
AATTATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TCTTATTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
74.3
0.55
0.9
71.2
39.6
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
60.7
0.41
1.6
77.49
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018672
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043992
79922408 - 79937647
15240
ENSAPLT00000031148
79922408 - 79937647
15240