Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79928999_79937228_F

Intron Information:

Intron Rank:

127353

Intron Class:

major

Intron Phase:

Intron Coordinates:

79928999 - 79937228

Intron Length:

8230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAAAAAT

U12 Branch Point Sequence:

TCAGCCAAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.9

90.9

28.7

Major BPS

50.5

0.01

1.1

57.3

34.4

Major PPT

75.7

0.58

0.8

31.7

Minor 5ss

40.3

-1.1

3.2

59.2

45.4

Minor BPS

-0.3

2.1

62.84

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043992

79922408 - 79937647

15240

ENSAPLT00000031148

79922408 - 79937647

15240

ENSAPLT00000028409

79924007 - 79937647

13641