Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_79987664_79987875_F

Intron Information:

Intron Rank:

149936

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

79987664 - 79987875

Intron Length:

212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

GGACCTTGTCTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAGAAAT

U12 Branch Point Sequence:

TTTGGTAGAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

79.1

24.2

Major BPS

59.4

0.23

1.2

65.3

38.6

Major PPT

59.3

0.21

50.4

43.6

Minor 5ss

35.8

-1.6

2.8

40.3

40.1

Minor BPS

42.7

-0.4

2.2

66.82

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030658

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031812

79987355 - 79993688

6334