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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80009891_80020893_F

Intron Information:

Intron Rank:
125262
Intron Class:
major
Intron Phase:
Intron Coordinates:
80009891 - 80020893
Intron Length:
11003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCCC
5'SS Class:
major
3'SS Sequence:
GGTTGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTTACTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
62.9
39.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75.5
0.57
0.9
69.5
41.6
Minor 5ss
34.2
-1.8
3.1
42
38.9
Minor BPS
50.3
0.09
2
74.32
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017449
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024715
80006701 - 80021417
14717