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Intron Name: Anas_platyrhynchos_platyrhynchos_2_80062577_80064008_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
80062577 - 80064008

Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTATTGTTC

5'SS Class:
major

3'SS Sequence:
TTGTTTTCTCTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTAAG

U12 Branch Point Sequence:
GTTGTTTTAAGG

Flanking Amino Acid:
SFKLLKPEKIGILDQSAVWV

Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73
0.54
1.1
68.4
37.2

Major BPS
75.6
0.64
1.5
84
34.5

Major PPT
84
0.77
0.8
77.9
36.6

Minor 5ss
47.4
-0.2
3
67.5
43.9

Minor BPS
52.2
-0
1.8
58.79
43.6

Associated Gene:

Gene:
EXOC2

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

80024763 - 80174569
149807