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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80074220_80078473_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80074220 - 80078473
Intron Length:
4254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTGC
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TGTTTCTTGAAT
Flanking Amino Acid:
WYLIENHSTTSFDQLKTAVV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
39.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
43
-0.8
2.4
53.7
43.4
Minor BPS
71.6
0.76
1.4
84.79
35.2

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807