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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80078599_80091280_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80078599 - 80091280
Intron Length:
12682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TACATTTTAACT
Flanking Amino Acid:
TFFEAQDALSAIHQKLEADG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.3
0.64
0.9
69.6
40.1
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
68.3
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807