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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80091362_80095250_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80091362 - 80095250
Intron Length:
3889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTTTAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
MTQKLENVLNRASNTADTLF
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70
0.45
1
67.6
36.8
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807