About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80096180_80099299_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80096180 - 80099299
Intron Length:
3120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
CTGGGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GATTTTTGGACT
Flanking Amino Acid:
STLHDQKRYIRYLSDLHAPG
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
75.2
0.57
1
67.9
42.5
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
57.9
0.33
1.4
72.86
37.9

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807