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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80122213_80125719_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80122213 - 80125719
Intron Length:
3507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATGAAT
U12 Branch Point Sequence:
TCTGTCTTACAG
Flanking Amino Acid:
IIVTLQHTAEDIKRLAEKED
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
54.5
0.11
1.4
65.3
38.6
Major PPT
82
0.72
0.8
75.5
33.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
48.5
-0.2
1.9
55.39
46.1

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807