About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80125782_80129352_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80125782 - 80129352
Intron Length:
3571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
ATTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTATCTAGAATC
Flanking Amino Acid:
VVDNEGLTSLPSQFEQCIVH
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.8
35.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
84.9
0.79
0.8
81.7
35.4
Minor 5ss
32.6
-2
3.1
38.1
42.1
Minor BPS
55.1
0.14
1.7
69.2
36

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807