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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80134569_80138949_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80134569 - 80138949
Intron Length:
4381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATGTTTTGATT
Flanking Amino Acid:
GFQGVEKITQVSMESLKELD
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
61.1
0.43
1.3
74.42
37.1

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807