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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80139092_80164101_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80139092 - 80164101
Intron Length:
25010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGTAATTAATT
Flanking Amino Acid:
FDWKDCLVPAGVRNYLKEAL
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
54.4
0.22
1.8
70.15
40.4

Associated Gene:

Gene:
EXOC2
Ensembl Gene ID:
ENSAPLG00000013910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014529
80024763 - 80174569
149807