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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80189316_80204605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80189316 - 80204605
Intron Length:
15290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
QRQRKLITAHRQAVK*
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.7
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
37.6
-1.4
2.8
47.1
41.6
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
IRF4
Ensembl Gene ID:
ENSAPLG00000014646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015286
80189298 - 80213358
24061