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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80204719_80207612_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80204719 - 80207612
Intron Length:
2894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCCTTCTTAACA
Flanking Amino Acid:
KLFDTQQFLAELQAFAHHGR
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
71.7
38.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.5
0.75
0.7
76.3
32.3
Minor 5ss
35.6
-1.6
2.8
46
42
Minor BPS
72.6
0.7
1.3
71.26
41.2

Associated Gene:

Gene:
IRF4
Ensembl Gene ID:
ENSAPLG00000014646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028998
80202668 - 80213358
10691
ENSAPLT00000022132
80202668 - 80213267
10600
ENSAPLT00000015286
80189298 - 80213358
24061