Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80207967_80209169_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80207967 - 80209169

Intron Length:

1203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTCTTTTTATTT

Flanking Amino Acid:

IRSGEALALSDCRLHICLYY

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.2

31.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.6

0.87

0.6

85.2

22.3

Minor 5ss

39.4

-1.2

3.3

56.7

47.6

Minor BPS

56.7

0.29

1.6

70.13

42.3

Associated Gene:

Gene:

IRF4

Ensembl Gene ID:

ENSAPLG00000014646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028998

80202668 - 80213358

10691

ENSAPLT00000015286

80189298 - 80213358

24061