About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80207967_80211070_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80207967 - 80211070
Intron Length:
3104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTTTTTATTT
Flanking Amino Acid:
HHWQAPGCENDCRLHICLYY
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
56.7
0.29
1.6
70.13
42.3

Associated Gene:

Gene:
IRF4
Ensembl Gene ID:
ENSAPLG00000014646
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022132
80202668 - 80213267
10600