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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80234499_80237267_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80234499 - 80237267
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGAC
5'SS Class:
major
3'SS Sequence:
TCATTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTCTGTTCATT
Flanking Amino Acid:
QEFEKHDVDQFRQWLKEEYG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.3
0.8
0.8
80.8
30.9
Minor 5ss
36
-1.6
3.4
49.2
47.3
Minor BPS
45.9
-0.2
2.4
69.3
42.1

Associated Gene:

Gene:
DUSP22
Ensembl Gene ID:
ENSAPLG00000015108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015760
80234313 - 80312024
77712
ENSAPLT00000046858
80234171 - 80279680
45510
ENSAPLT00000026393
80234171 - 80267724
33554