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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80258824_80265730_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80258824 - 80265730
Intron Length:
6907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TTTTCCTTCATC
Flanking Amino Acid:
LPGLFIGNFKDARDVEQLSK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
78
0.63
0.8
72.4
30.8
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
76.7
0.82
1.6
86.11
32.2

Associated Gene:

Gene:
DUSP22
Ensembl Gene ID:
ENSAPLG00000015108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046858
80234171 - 80279680
45510
ENSAPLT00000026393
80234171 - 80267724
33554
ENSAPLT00000015760
80234313 - 80312024
77712