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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80321870_80323559_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
80321870 - 80323559
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTAATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
PNCYDSGLLKNKLALFSFTT
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.7
0.74
0.8
75.5
38.4
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
NQO2
Ensembl Gene ID:
ENSAPLG00000015289
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015938
80308529 - 80325005
16477