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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80334355_80335620_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80334355 - 80335620
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTAC
5'SS Class:
major
3'SS Sequence:
TGCTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTCAGTGTAATT
Flanking Amino Acid:
KTVYTGPQRTEYNASLLEEG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
68.2
33.3
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
36.3
-1.6
2.8
40
40.1
Minor BPS
45.6
-0.2
2.3
67.54
44.3

Associated Gene:

Gene:
RIPK1
Ensembl Gene ID:
ENSAPLG00000015420
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025938
80334151 - 80350170
16020
ENSAPLT00000016085
80331299 - 80351948
20650