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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80341493_80344419_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80341493 - 80344419
Intron Length:
2927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTCTTTTACA
Flanking Amino Acid:
NIEEDLKKIKKVWPEPNELL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.7
0.58
0.9
71.2
33.7
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
72.3
0.7
1.5
80.29
35.7

Associated Gene:

Gene:
RIPK1
Ensembl Gene ID:
ENSAPLG00000015420
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025938
80334151 - 80350170
16020
ENSAPLT00000016085
80331299 - 80351948
20650