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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80346914_80347922_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80346914 - 80347922
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
ACTATCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTATCT
Flanking Amino Acid:
RYPKTADIDTGNDSTSFSRG
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.6
0.42
1
66.3
40
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
56.7
0.29
2.2
86.34
39.1

Associated Gene:

Gene:
RIPK1
Ensembl Gene ID:
ENSAPLG00000015420
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025938
80334151 - 80350170
16020
ENSAPLT00000016085
80331299 - 80351948
20650