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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80347992_80348844_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80347992 - 80348844
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCGCAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGCAAT
U12 Branch Point Sequence:
CCTGTCGCAATG
Flanking Amino Acid:
YYPPVPQLPRAGREWRSSAR
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
49.7
-0
1.5
58.7
44.5
Major PPT
66.8
0.38
1
59.5
40.7
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
40.1
-0.8
2.2
41.82
44.1

Associated Gene:

Gene:
RIPK1
Ensembl Gene ID:
ENSAPLG00000015420
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025938
80334151 - 80350170
16020