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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_80347992_80351174_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80347992 - 80351174
Intron Length:
3183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTATTTTAACT
Flanking Amino Acid:
YYPPVPQLPREDSIKYSISN
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.3
0.61
0.8
72.7
31.1
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
75.7
0.89
1.1
86.62
32.6

Associated Gene:

Gene:
RIPK1
Ensembl Gene ID:
ENSAPLG00000015420
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016085
80331299 - 80351948
20650